Run with PythonΒΆ
We use python library, vcfpy.
Get Docker from Docker Hub
docker pull oxfordmmm/funvcf:v0.1.0Install nextflow if not exists, go Nextflow.
Run tests
nextflow run vcf-python.nf --input data/ --pattern *.vcf --output tests-python -profile dockernextflow run vcf-python.nf --input data/ --pattern *.vcf --output tests-python -with-singularity funvcf-v0.1.0.img