Run with PythonΒΆ

We use python library, vcfpy.

  1. Get Docker from Docker Hub

    docker pull oxfordmmm/funvcf:v0.1.0

  2. Install nextflow if not exists, go Nextflow.

  3. Run tests

    nextflow run vcf-python.nf --input data/ --pattern *.vcf --output tests-python -profile docker

    nextflow run vcf-python.nf --input data/ --pattern *.vcf --output tests-python -with-singularity funvcf-v0.1.0.img