Run with Python

We use python library, vcfpy.

  1. Get Docker from Docker Hub
docker pull oxfordmmm/funvcf:v0.1.0

  1. Install nextflow if not exists, go Nextflow.

  2. Run tests

nextflow run vcf-python.nf --input data/ --pattern *.vcf --output tests-python -profile docker
nextflow run vcf-python.nf --input data/ --pattern *.vcf --output tests-python -with-singularity funvcf-v0.1.0.img